top of page
McDonnell Genome Institute
Washington University
Transcript
lnc-GZMK-3:2
Chromosome
chr5
Gene Name
lnc-GZMK-3
Start
54857271
CPC Label
coding
End
54858491
Cancer
BRCA-HER2-enriched
Strand
+
Peptide
LCEFQEGGRAITVSSHLK
Modified Peptide
n[145]LCEFQEGGRAITVSSHLK
Peptide Length
18
ORF Length
177
Open Reading Frame (ORF)
LKNQIFNGIQMTRGYSGWELCDCKNCGQVFSEQFCLKTHMRAQNGGNTSEGNCYGKDILSVHKEASIGQELSKFNPCGNVYTLTPGFAVHLEILNARQPYKCKECGKGFKYFVSLDNHMGIHTGEKLCEFQEGGRAITVSSHLKQCVTVHTGKKSKKTKKGGKSFTNFSQLYTCEKS
Conservation Score
1
PhyloCSF Frame 1
0
No. of Spectra
8
CPC Coding Probability
0.810031
PhyloCSF Frame 2
0
CNTI Index
noncoding
Max Probability
0.8131
PhyloCSF Frame 3
0
CNTI Score
-0.373106881
bottom of page