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McDonnell Genome Institute
Washington University
Transcript
lnc-GGT1-16:1
Chromosome
chr22
Gene Name
lnc-GGT1-16
Start
24632914
CPC Label
coding
End
24647760
Cancer
BRCA-HER2-enriched
Strand
+
Peptide
HVTSFSVSFLHLLFYYFK
Modified Peptide
n[145]HVTSFSVSFLHLLFYYFK
Peptide Length
18
ORF Length
246
Open Reading Frame (ORF)
LLGYWTLDPQALQDRDWQRAVIAMNGIEVKLSVKFNSREFSLKRMPSRKQTGVFGVKIAVVTKRERSKVPYIMRQCVEEIERRGMEEVGIYRVSGVATDIQALKAGFNVSECRPAQDGMEVWAVVSAMRSQSAPWPRHVTSFSVSFLHLLFYYFKKRENKSCTNSFYRSQFLHHRTHSCHLVEWTRGFCGDLAFLPWGWTGGGSPGLSAVCPLPCMRMWWAEGTDEIQRRPGLQHLRLHLTNPHRP
Conservation Score
1
PhyloCSF Frame 1
6.752
No. of Spectra
5
CPC Coding Probability
0.991444
PhyloCSF Frame 2
0
CNTI Index
coding
Max Probability
0.9682
PhyloCSF Frame 3
0
CNTI Score
0.756474029
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