top of page
McDonnell Genome Institute
Washington University
Transcript
lnc-COL1A1-6:3
Chromosome
chr17
Gene Name
lnc-COL1A1-6
Start
50171427
CPC Label
coding
End
50172476
Cancer
OSCC
Strand
-
Peptide
LILFLATQGEK
Modified Peptide
n[145]LILFLATQGEK
Peptide Length
11
ORF Length
61
Open Reading Frame (ORF)
LILFLATQGEKQKGTSPLSPSVLLNSNTAMGGGQQGSVSLARQRLGNAPVPNPARSPARPR
Conservation Score
1
PhyloCSF Frame 1
1.64
No. of Spectra
67
CPC Coding Probability
0.99983
PhyloCSF Frame 2
-4.823
CNTI Index
noncoding
Max Probability
0.9932
PhyloCSF Frame 3
-1.067
CNTI Score
-0.279248047
bottom of page