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McDonnell Genome Institute
Washington University
Transcript
lnc-CASP3-4:1
Chromosome
chr4
Gene Name
lnc-CASP3-4
Start
184559174
CPC Label
noncoding
End
184559783
Cancer
BRCA-HER2-enriched
Strand
-
Peptide
SGGFRGGRGGGGFR
Modified Peptide
n[145]SGGFRGGRGGGGFR
Peptide Length
14
ORF Length
135
Open Reading Frame (ORF)
LLGEFLHPCEDDIVCKRTADENKVSYFNAPVYLENKEQIGKADEIFGQLRDFYFSVKMSENEKASSFKKLWKFYIDPYELLPLQRFLPRPPGEKGPPRCGGRGGRGGRRGGGRGSGRSGGFRGGRGGGGFRGRGR
Conservation Score
1
PhyloCSF Frame 1
-0.169
No. of Spectra
12
CPC Coding Probability
0.157166
PhyloCSF Frame 2
-4.778
CNTI Index
coding
Max Probability
0.9222
PhyloCSF Frame 3
-0.743
CNTI Score
0.686714348
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