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McDonnell Genome Institute
Washington University
Transcript
lnc-AK6-10:1
Chromosome
chr5
Gene Name
lnc-AK6-10
Start
70108237
CPC Label
coding
End
70123380
Cancer
BRCA-HER2-enriched
Strand
-
Peptide
EGSVTEMCMR
Modified Peptide
n[145]EGSVTEMCMR
Peptide Length
10
ORF Length
757
Open Reading Frame (ORF)
MKSSAEVTPDLQSRGELCELLETTSESNLEDSIAVGPIVPEMAQGEAQWFQEAKNLNEQLRAAYTSASFRHMSLLDISSDLATDHLLGCDLSIASKHISKPVQEPLVLPEVFGNLNSVMCVEGEAGSGKTVLLKKIAFLWASGCCPLLNRFQLVFYLSLSSTRPDEGLASIICDQLLEKEGSVTEMCMRNIIQQLKNQVLFLLDDYKEICSIPQVIGKLIQKNHLSRTCLLIAVRTNRARDIRRYLETILEIKAFPFYNTVCILRKLFSHNMTRLRKFMVYFGKNQSLQKIQKTPLFVAAICAHWFQYPFDPSFDDVAVFKSYMERLSLRNKATAEILKATVSSCGELALKGFFSCCFEFNDDDLAEAGVDEDEDLTMCLMSKFTAQRLRPFYRFLSPAFQEFLAGMRLIELLDSDRQEHQDLGLYHLKQINSPMMTVSAYNNFLNYVSSLPSTKAGPKIVSHLLHLVDNKESLENISENDDYLKHQPEISLQMQLLRGLWQICPQAYFSMVSEHLLVLALKTAYQSNTVAACSPFVLQFLQGRTLTLGALNLQYFFDHPESLSLLRSIHFPIRGNKTSPRAHFSVLETCFDKSQVPTIDQDYASAFEPMNEWERNLAEKEDNVKSYMDMQRRASPDLSTGYWKLSPKQYKIPCLEVDVNDIDVVGQDMLEILMTVFSASQRIELHLNHSRGFIESIRPALELSKASVTKCSISKLELSAAEQELLLTLPSLESLEVSGTIQSQGIPVYILDDYSDV
Conservation Score
1
PhyloCSF Frame 1
-2.384
No. of Spectra
7
CPC Coding Probability
1
PhyloCSF Frame 2
6.005
CNTI Index
coding
Max Probability
1
PhyloCSF Frame 3
-3.374
CNTI Score
0.768075577
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