McDonnell Genome Institute

Washington University

Transcript

lnc-ZNF627-2:10

Chromosome

chr19

Gene Name

lnc-ZNF627-2

Start

11639802

CPC Label

coding

End

11681205

Cancer

BRCA-HER2-enriched

Strand

+

Peptide

AFSHPTTFHR

Modified Peptide

n[145]AFSHPTTFHR

Peptide Length

10

ORF Length

444

Open Reading Frame (ORF)

MIFEDVAVNFTQEEWALLDPSQKKLYRDVMWEIIRNLMSVGIKWEDRNIEDQYKNSRRNPRNHMAERLCECKDGQCGETFSLIPDGIMNKNTLPGVKPCESSVCGEGNVDHSSLNCYIRADTGHKPYECQEHGEKPHKCKQCVKTFSCLHSFQTHEKPHTGEKPYDCKEWEKTFDSPQTVRRYRVVHSGDGPYKCKFCGKAFDNLSLYLTHERSHTGQKPYECNECGKAFGFPSSFHRHERMHTGEKPYECKQCGKTFSCSSSIKKHERIHTGEKPYECKQCGKAFASSNSFQYHERTHTGEKPYECKQCGKAFNCSSSLRKHARIHTGEKPYICKQCGKAFRFPSSIKNHEKTHTGEKPYECQECGKAFRYSSSLRVHKRIHTGEKPYECEDCGKAFSHPTTFHRHKITHTAEKPYECQECGEAFRYPVAFRRHKITHTAEKL

Conservation Score

1

PhyloCSF Frame 1

-4.081

No. of Spectra

1

CPC Coding Probability

0.999962

PhyloCSF Frame 2 

3.708

CNTI Index

coding

Max Probability

0.6781

PhyloCSF Frame 3

1.371

CNTI Score

0.732826673