McDonnell Genome Institute

Washington University

Transcript

lnc-VWC2L-1:13

Chromosome

chr2

Gene Name

lnc-VWC2L-1

Start

214810228

CPC Label

noncoding

End

214850229

Cancer

BRCA-Luminal B

Strand

+

Peptide

GAFGMPQGTVAR

Modified Peptide

n[145]GAFGMPQGTVAR

Peptide Length

12

ORF Length

100

Open Reading Frame (ORF)

MRGAFGMPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKLPGHQKIHISKKWGFTKFNADEFEDMVAEKWLIPDGCGVKYIPNRGPLDKWRALHS

Conservation Score

1

PhyloCSF Frame 1

5.3

No. of Spectra

7

CPC Coding Probability

0.106921

PhyloCSF Frame 2 

-4.482

CNTI Index

coding

Max Probability

0.9321

PhyloCSF Frame 3

-4.083

CNTI Score

0.716179713