McDonnell Genome Institute

Washington University

Transcript

lnc-USH2A-4:1

Chromosome

chr1

Gene Name

lnc-USH2A-4

Start

214482538

CPC Label

coding

End

214483476

Cancer

LUAD

Strand

-

Peptide

MGGMVLETNMNEIVTQIDAQSK

Modified Peptide

n[272]M[147]GGMVLETNM[147]NEIVTQIDAQSK

Peptide Length

22

ORF Length

69

Open Reading Frame (ORF)

MGGMVLETNMNEIVTQIDAQSKLEKSEGGLVGAPACAVSAVKNMNLPEIPRNINIGDISIKVPNLSSFK

Conservation Score

1

PhyloCSF Frame 1

-4.077

No. of Spectra

1

CPC Coding Probability

0.849304

PhyloCSF Frame 2 

-5.093

CNTI Index

coding

Max Probability

0.5747

PhyloCSF Frame 3

-3.701

CNTI Score

0.603069825