McDonnell Genome Institute

Washington University

Transcript

lnc-UGGT1-3:1

Chromosome

chr2

Gene Name

lnc-UGGT1-3

Start

128203360

CPC Label

coding

End

128203775

Cancer

BRCA-HER2-enriched

Strand

+

Peptide

ALVGGACTQVR

Modified Peptide

n[145]ALVGGACTQVR

Peptide Length

11

ORF Length

103

Open Reading Frame (ORF)

MVFRHFVEVGQVAYISGPHAGKLVAIIDVVDENRALVGGACTQVRRQAMPFKCMQLTDFILKFPPSAHPRGMAKKPGRRQPSIQNGQAHNGPRRVKPKKGKPK

Conservation Score

1

PhyloCSF Frame 1

0

No. of Spectra

1

CPC Coding Probability

0.50873

PhyloCSF Frame 2 

0

CNTI Index

noncoding

Max Probability

0.5039

PhyloCSF Frame 3

0

CNTI Score

-0.366365258