McDonnell Genome Institute

Washington University

Transcript

lnc-UBP1-5:1

Chromosome

chr3

Gene Name

lnc-UBP1-5

Start

33682978

CPC Label

noncoding

End

33688368

Cancer

BRCA-HER2-enriched

Strand

-

Peptide

LIPHLCILFGDSNSQVR

Modified Peptide

n[145]LIPHLCILFGDSNSQVR

Peptide Length

17

ORF Length

109

Open Reading Frame (ORF)

LASGFKHKNFRSREGVCLCLIETLNIFGAQPLVISKLIPHLCILFGDSNSQVRDAAILAIVEIYRHVGEKVRMDLYKRGIPPARQGLALLPRLQCSVTISAYCNLHLPG

Conservation Score

1

PhyloCSF Frame 1

0

No. of Spectra

16

CPC Coding Probability

0.0191126

PhyloCSF Frame 2 

4.846

CNTI Index

noncoding

Max Probability

1

PhyloCSF Frame 3

0

CNTI Score

-0.444898912