McDonnell Genome Institute

Washington University

Transcript

lnc-TTR-1:2

Chromosome

chr18

Gene Name

lnc-TTR-1

Start

31684724

CPC Label

noncoding

End

31687859

Cancer

BRCA-HER2-enriched

Strand

+

Peptide

EVMNAEEAK

Modified Peptide

n[145]EVMNAEEAK

Peptide Length

9

ORF Length

44

Open Reading Frame (ORF)

MQAKEVMNAEEAKIVIFPSPIPLFIYLYLHQLDWLFTKLIPPYH

Conservation Score

0.173

PhyloCSF Frame 1

-4.913

No. of Spectra

1

CPC Coding Probability

0.0722119

PhyloCSF Frame 2 

-5.773

CNTI Index

coding

Max Probability

0.9952

PhyloCSF Frame 3

-2.247

CNTI Score

0.779526183