McDonnell Genome Institute

Washington University

Transcript

lnc-TSSK6-4:1

Chromosome

chr19

Gene Name

lnc-TSSK6-4

Start

19355266

CPC Label

coding

End

19495845

Cancer

LUAD

Strand

-

Peptide

AGTGPAHSQDLEALETIRK

Modified Peptide

n[230]AGTGPAHSQDLEALETIRK

Peptide Length

19

ORF Length

173

Open Reading Frame (ORF)

MALERQRLCATCEPLHWGSCCEVGTATTPPGRAGTGPAHSQDLEALETIRKEARLGGRLECRLGGSRRRAGPAELDGPIKASQEAGQAGVGSILSLELHGGWTVCPLWGGEDMRVRHCGPFPGKKRLECCLPWAAHTAGTLFSMPQSNGPRGDTWVPCLGGGAHGHLPHQGIT

Conservation Score

1

PhyloCSF Frame 1

-2.346

No. of Spectra

11

CPC Coding Probability

0.546324

PhyloCSF Frame 2 

9.318

CNTI Index

noncoding

Max Probability

0.998

PhyloCSF Frame 3

-2.381

CNTI Score

-0.331845914