McDonnell Genome Institute

Washington University

Transcript

lnc-TRAM1L1-7:1

Chromosome

chr4

Gene Name

lnc-TRAM1L1-7

Start

117575031

CPC Label

coding

End

117576108

Cancer

BRCA-HER2-enriched

Strand

-

Peptide

VEEMICGLIK

Modified Peptide

n[145]VEEMICGLIK

Peptide Length

10

ORF Length

184

Open Reading Frame (ORF)

MDRAAVARVGAVVSASVCALVAGVVLAQYIFTLKRKTGRKTKIIEMMPEFQKSSVRIKNLTRVEEMICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHNSIDNCQLITDECRKKLLQLKKKYYAIEVDPVLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKERYEEFL

Conservation Score

1

PhyloCSF Frame 1

0

No. of Spectra

14

CPC Coding Probability

0.945357

PhyloCSF Frame 2 

0

CNTI Index

coding

Max Probability

0.9681

PhyloCSF Frame 3

0

CNTI Score

0.710023733