McDonnell Genome Institute

Washington University

Transcript

lnc-TNFSF4-3:1

Chromosome

chr1

Gene Name

lnc-TNFSF4-3

Start

173235059

CPC Label

noncoding

End

173477155

Cancer

BRCA-Luminal B

Strand

-

Peptide

TAALGAAR

Modified Peptide

n[145]TAALGAAR

Peptide Length

8

ORF Length

41

Open Reading Frame (ORF)

LRRLRTAALGAARVRAHPAAHPLAASSLQRSGVTARLPPLF

Conservation Score

0.06

PhyloCSF Frame 1

-4.542

No. of Spectra

46

CPC Coding Probability

0.0463439

PhyloCSF Frame 2 

-4.057

CNTI Index

noncoding

Max Probability

0.9982

PhyloCSF Frame 3

-4.376

CNTI Score

-0.314669538