McDonnell Genome Institute

Washington University

Transcript

lnc-TNFRSF19-8:1

Chromosome

chr13

Gene Name

lnc-TNFRSF19-8

Start

23243519

CPC Label

coding

End

23247184

Cancer

BRCA-HER2-enriched

Strand

+

Peptide

KPMMIHCREADEDLLGILK

Modified Peptide

n[145]KPM[147]M[147]IHCREADEDLLGILK

Peptide Length

19

ORF Length

127

Open Reading Frame (ORF)

LWHLEKWAWITPTCAPHMSQSSRRYLKDSCSWPSLLKKPMMIHCREADEDLLGILKKYVPSDHKMYQHCFTGSYPVIEPLLSHFPNLYVGFMAILTYSSAEQARETVKKIPLERIIVETNAPFFLPH

Conservation Score

1

PhyloCSF Frame 1

0

No. of Spectra

1

CPC Coding Probability

0.546698

PhyloCSF Frame 2 

0

CNTI Index

noncoding

Max Probability

0.6015

PhyloCSF Frame 3

0

CNTI Score

-0.279655748