The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-TMUB2-1:11

Chromosome

chr17

Gene Name

lnc-TMUB2-1

Start

44220134

CPC Label

noncoding

End

44225724

Cancer

OSCC

Strand

+

Peptide

ASQALQRPTR

Modified Peptide

n[145]ASQALQRPTR

Peptide Length

10

ORF Length

169

Open Reading Frame (ORF)

MVFVFFFSFCRAGMLRLLDISAPSSHSPAEPPGGLGVGARGAGAGERGLKASQALQRPTRACTPPPVPAEKSSSYPASIALRFSSNQPVAWWLLHSPAKPSCLERAPLLHLFAGVLAPLPGPARRREAGGGFARKPACFPLPLLHPRCLLPPASLLRLSNSPLSPLVCV

Conservation Score

1

PhyloCSF Frame 1

6.318

No. of Spectra

3

CPC Coding Probability

0.304634

PhyloCSF Frame 2 

3.836

CNTI Index

coding

Max Probability

0.1656

PhyloCSF Frame 3

4.639

CNTI Score

0.724840616