The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-TARBP1-6:1

Chromosome

chr1

Gene Name

lnc-TARBP1-6

Start

234356703

CPC Label

coding

End

234357141

Cancer

OV

Strand

-

Peptide

TFNQVEVKPEMIGHYLGEFSITYKPVK

Modified Peptide

n[145]TFNQVEVKPEM[147]IGHYLGEFSITYKPVK

Peptide Length

27

ORF Length

145

Open Reading Frame (ORF)

MAEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKRHYLLKRLRKAKKEAPPMEKPEVVKTHLRDVIILPEVVGSMVGVHNGKTFNQVEVKPEMIGHYLGEFSITYKPVKQCRSGIGATHSFCFIPLK

Conservation Score

1

PhyloCSF Frame 1

0

No. of Spectra

5

CPC Coding Probability

0.820696

PhyloCSF Frame 2 

0

CNTI Index

coding

Max Probability

1

PhyloCSF Frame 3

0

CNTI Score

0.79450949