McDonnell Genome Institute

Washington University

Transcript

lnc-SSR3-11:1

Chromosome

chr3

Gene Name

lnc-SSR3-11

Start

156809591

CPC Label

noncoding

End

156810705

Cancer

BRCA-Basal-like

Strand

-

Peptide

VAHSFNCTPVEGMLSHQLK

Modified Peptide

n[145]VAHSFNCTPVEGM[147]LSHQLK

Peptide Length

19

ORF Length

225

Open Reading Frame (ORF)

LVKPGNQNTQVTQAWNKVAHSFNCTPVEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFDIHKVYAVDVLVSSGEGKPKDAGQRTTIYKQDPSKQYGLKMKTSRAFFSEVETRFDAMPFTLRAFEDEKKAQMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPSGPMRITSGPFEPDLCKSEMEVQDAELKALLQSSTSRKTQKKKTKKASKTAEN

Conservation Score

1

PhyloCSF Frame 1

0

No. of Spectra

1

CPC Coding Probability

0.245649

PhyloCSF Frame 2 

0

CNTI Index

coding

Max Probability

0.9992

PhyloCSF Frame 3

0

CNTI Score

0.759038619