The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-SPRY1-11:12

Chromosome

chr4

Gene Name

lnc-SPRY1-11

Start

123639550

CPC Label

noncoding

End

123962665

Cancer

BRCA-HER2-enriched

Strand

+

Peptide

FNEIEKKR

Modified Peptide

n[145]FNEIEKKR

Peptide Length

8

ORF Length

41

Open Reading Frame (ORF)

LRSSCCLHGIPILGKFNEIEKKRVESSRPFFFINFFKNITL

Conservation Score

0.349

PhyloCSF Frame 1

-5.298

No. of Spectra

1

CPC Coding Probability

0.045908

PhyloCSF Frame 2 

-5.543

CNTI Index

noncoding

Max Probability

0.1701

PhyloCSF Frame 3

-5.172

CNTI Score

-0.366446437