The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-SPAST-1:1

Chromosome

chr2

Gene Name

lnc-SPAST-1

Start

32201599

CPC Label

coding

End

32203999

Cancer

CCRC

Strand

+

Peptide

SVTEIAMNPHIK

Modified Peptide

n[230]SVTEIAMNPHIK

Peptide Length

12

ORF Length

146

Open Reading Frame (ORF)

MTQKAAASVEHLAIRCHWSQRPAVTGDVLQVYSGSEGTAIIFCETQRSVTEIAMNPHIKQNAQCLHGDIAQSQREFTLKDFREGSFKVLVATNVAACGLDIPEVDLVIHGSPPQDVESISIVLDAQVELDRQGFVYVFINQEKEVN

Conservation Score

1

PhyloCSF Frame 1

0

No. of Spectra

13

CPC Coding Probability

0.91342

PhyloCSF Frame 2 

0

CNTI Index

coding

Max Probability

0.9826

PhyloCSF Frame 3

0

CNTI Score

0.632678025