McDonnell Genome Institute

Washington University

Transcript

lnc-SPANXB1-3:1

Chromosome

chrX

Gene Name

lnc-SPANXB1-3

Start

141138477

CPC Label

noncoding

End

141139174

Cancer

BRCA-Basal-like

Strand

+

Peptide

ESDIMTGSRVAMVPAQGK

Modified Peptide

n[145]ESDIMTGSRVAM[147]VPAQGK

Peptide Length

18

ORF Length

89

Open Reading Frame (ORF)

MPRESDIMTGSRVAMVPAQGKRCYDRKQSGYGGQTKPIFWKKAKTTKKIVLRLECVEPNCRSKRTLAIKRCKHFELGGDKKRKGQVIQF

Conservation Score

1

PhyloCSF Frame 1

0

No. of Spectra

1

CPC Coding Probability

0.2644

PhyloCSF Frame 2 

0

CNTI Index

noncoding

Max Probability

0.8569

PhyloCSF Frame 3

0

CNTI Score

-0.357168443