The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-SNX31-1:3

Chromosome

chr8

Gene Name

lnc-SNX31-1

Start

100550723

CPC Label

noncoding

End

100551713

Cancer

HCC

Strand

-

Peptide

AAFNSSK

Modified Peptide

n[230]AAFNSSK

Peptide Length

7

ORF Length

120

Open Reading Frame (ORF)

LGHIGHLVTRAAFNSSKVDIVTINDPSLTSTTWSACSSISTHGKFHHTVKAENGKLVINGNPITIFQEQDPTKIKWGDAEAEYAVESTGIFMTIEKAGAHLMGEPKGSSSLPPLLMPPYS

Conservation Score

1

PhyloCSF Frame 1

-1.98

No. of Spectra

15

CPC Coding Probability

0.0326234

PhyloCSF Frame 2 

-4.135

CNTI Index

coding

Max Probability

0.6466

PhyloCSF Frame 3

-1.496

CNTI Score

0.654393543