The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-SNAPC3-4:1

Chromosome

chr9

Gene Name

lnc-SNAPC3-4

Start

15588354

CPC Label

noncoding

End

15588615

Cancer

BRCA-Basal-like

Strand

+

Peptide

NPAGNGDAK

Modified Peptide

n[145]NPAGNGDAK

Peptide Length

9

ORF Length

86

Open Reading Frame (ORF)

MPKRKPEGDATGDKAKLQRRSARLSAKPAPSKPERKPKKPSLPLQRREKRYPKGKADAYKEGKNPAGNGDAKTDQAQEAQRAGDAK

Conservation Score

1

PhyloCSF Frame 1

0

No. of Spectra

3

CPC Coding Probability

0.285703

PhyloCSF Frame 2 

0

CNTI Index

noncoding

Max Probability

0.4983

PhyloCSF Frame 3

0

CNTI Score

-0.331649885