The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-SLX1B-3:23

Chromosome

chr16

Gene Name

lnc-SLX1B-3

Start

29259921

CPC Label

coding

End

29381082

Cancer

EOGC

Strand

+

Peptide

VSPGHPGIAR

Modified Peptide

n[145]VSPGHPGIAR

Peptide Length

10

ORF Length

327

Open Reading Frame (ORF)

LRHIASDVGRGRTWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAGPNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTLLKESTQGVSSVFREITASSAISILIKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNREFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKCCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCDESPAAPCHPPRVSPGHPGIAR

Conservation Score

1

PhyloCSF Frame 1

10.346

No. of Spectra

1

CPC Coding Probability

0.999999

PhyloCSF Frame 2 

8.811

CNTI Index

coding

Max Probability

0.835

PhyloCSF Frame 3

9.398

CNTI Score

0.838309964