McDonnell Genome Institute

Washington University

Transcript

lnc-SLCO4A1-4:1

Chromosome

chr20

Gene Name

lnc-SLCO4A1-4

Start

62724422

CPC Label

coding

End

62732056

Cancer

HCC

Strand

+

Peptide

LSVIGITPHLESQQTK

Modified Peptide

n[230]LSVIGITPHLESQQTK

Peptide Length

16

ORF Length

66

Open Reading Frame (ORF)

LSVIGITPHLESQQTKRREEDGGRGRRREVEEGGGWRSEGEGGGGRLAVPRITQPRKSVERWPALA

Conservation Score

0.034

PhyloCSF Frame 1

0

No. of Spectra

21

CPC Coding Probability

0.545135

PhyloCSF Frame 2 

0

CNTI Index

noncoding

Max Probability

0.9985

PhyloCSF Frame 3

0

CNTI Score

-0.286837999