The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-SLC9A3-5:1

Chromosome

chr5

Gene Name

lnc-SLC9A3-5

Start

403730

CPC Label

coding

End

404546

Cancer

HCC

Strand

-

Peptide

KAENVDESENK

Modified Peptide

KAENVDESENK

Peptide Length

11

ORF Length

145

Open Reading Frame (ORF)

MQTHQERLRLRETEKGNPKPGPTLTTELTFSSNAGQHDLDAKTKQIQPWIKKKHQVRITVKKAENVDESENKVEEIFHQILQTVPGIATFSSRPQAVQGGKALMWVLCPLSKKEEKAYRETQETQERDPLNKDHGNDKESNVLHQ

Conservation Score

1

PhyloCSF Frame 1

0

No. of Spectra

17

CPC Coding Probability

0.898991

PhyloCSF Frame 2 

0

CNTI Index

noncoding

Max Probability

0.9777

PhyloCSF Frame 3

0

CNTI Score

-0.319760522