The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-SLC45A4-3:2

Chromosome

chr8

Gene Name

lnc-SLC45A4-3

Start

141268007

CPC Label

noncoding

End

141308305

Cancer

HCC

Strand

-

Peptide

LALGGLLVLR

Modified Peptide

n[272]LALGGLLVLR

Peptide Length

10

ORF Length

44

Open Reading Frame (ORF)

LALGGLLVLRTWRVVRPCLTWSAPWAGLEDPGPWAFSSPHSRPP

Conservation Score

0.035

PhyloCSF Frame 1

-5.779

No. of Spectra

2

CPC Coding Probability

0.0234421

PhyloCSF Frame 2 

-2.7

CNTI Index

noncoding

Max Probability

0.2963

PhyloCSF Frame 3

-5.122

CNTI Score

-0.283389751