The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-SLC44A5-4:3

Chromosome

chr1

Gene Name

lnc-SLC44A5-4

Start

75638166

CPC Label

coding

End

75723036

Cancer

CCRC

Strand

-

Peptide

LRNPFVINDLNMQYLIQDWR

Modified Peptide

n[230]LRNPFVINDLNM[147]QYLIQDWR

Peptide Length

20

ORF Length

229

Open Reading Frame (ORF)

MAKKSKSKPMKEILEWVSLFKYITVVVFEEEVILREPVENWPLCDCLFSLHSKGFPLDKVVAYAKLRNPFVINDLNMQYLIQDWREVYSILQAEVILLPCYAILNRDPNNPKECNLIEGEDHVEVNEEVFQKPFVEKPVSAEDHNVYIYYPTSAGSGSQRLFRKIGSRSSAYSPQSNVQKSSSYTHEEFMPGDDTNVKRFLMFCTTNIFGSLKPMDSFLTKVFLNALNM

Conservation Score

1

PhyloCSF Frame 1

0

No. of Spectra

1

CPC Coding Probability

0.999483

PhyloCSF Frame 2 

0

CNTI Index

coding

Max Probability

0.4283

PhyloCSF Frame 3

0

CNTI Score

0.623777337