McDonnell Genome Institute

Washington University

Transcript

lnc-SLC28A2-2:1

Chromosome

chr15

Gene Name

lnc-SLC28A2-2

Start

45215546

CPC Label

noncoding

End

45215943

Cancer

BRCA-Luminal B

Strand

+

Peptide

AYLVGLFENTNLCAIHAK

Modified Peptide

n[145]AYLVGLFENTNLCAIHAK

Peptide Length

18

ORF Length

60

Open Reading Frame (ORF)

LLRTLKQICASRAIGALQESSKAYLVGLFENTNLCAIHAKHVTVMPKDIQLALRTRGERA

Conservation Score

1

PhyloCSF Frame 1

0

No. of Spectra

1

CPC Coding Probability

0.0968625

PhyloCSF Frame 2 

0

CNTI Index

noncoding

Max Probability

1

PhyloCSF Frame 3

0

CNTI Score

-0.365670671