The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-SLC16A3-2:6

Chromosome

chr17

Gene Name

lnc-SLC16A3-2

Start

82216955

CPC Label

coding

End

82217694

Cancer

BRCA-Basal-like

Strand

+

Peptide

TRGCSLEAGVEQAVLPSGWAPK

Modified Peptide

n[145]TRGCSLEAGVEQAVLPSGWAPK

Peptide Length

22

ORF Length

175

Open Reading Frame (ORF)

LPGSQVLRPERSQEMKGPGGCEWASVSGCSRRRGVGTDSCLRAGGREAPLDRKTLQEQTSKTGTVQMGPGAGQRRQTCPTAAVTTATSWRSRPGGRASAARDPGVDTGRTRGCSLEAGVEQAVLPSGWAPKGAPSQAVLPRPASSRRRGAKVPRHPPSSAALSTAGTAACEQEVL

Conservation Score

0.106

PhyloCSF Frame 1

-3.017

No. of Spectra

1

CPC Coding Probability

0.516835

PhyloCSF Frame 2 

0

CNTI Index

noncoding

Max Probability

0.6854

PhyloCSF Frame 3

-4.008

CNTI Score

-0.294954383