McDonnell Genome Institute

Washington University

Transcript

lnc-SKIDA1-1:1

Chromosome

chr10

Gene Name

lnc-SKIDA1-1

Start

21624591

CPC Label

coding

End

21626286

Cancer

EOGC

Strand

-

Peptide

AAVMAMDEMNGK

Modified Peptide

n[145]AAVMAMDEMNGK

Peptide Length

12

ORF Length

123

Open Reading Frame (ORF)

MAKVKVFFVRNLGTDEILEKSFSEFGELQRVNKLKDYAFVHSEDRRAAVMAMDEMNGKETEGEELEIVLAKAPDKKRKERQAARQASRSTAYEDYHYTLLLACRFRLEVGGEVDMANLQITMA

Conservation Score

1

PhyloCSF Frame 1

-3.98

No. of Spectra

2

CPC Coding Probability

0.853632

PhyloCSF Frame 2 

-3.868

CNTI Index

coding

Max Probability

0.557

PhyloCSF Frame 3

-4.939

CNTI Score

0.665280571