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McDonnell Genome Institute
Washington University
Transcript
lnc-SHOX2-7:1
Chromosome
chr3
Gene Name
lnc-SHOX2-7
Start
158275808
CPC Label
noncoding
End
158276421
Cancer
BRCA-Luminal B
Strand
-
Peptide
APHPIWPDK
Modified Peptide
n[145]APHPIWPDK
Peptide Length
9
ORF Length
112
Open Reading Frame (ORF)
MGAYKHIQELWRKQPDVIMRFLLRVCCWQYRQLSALHRAPHPIWPDKLCRLGCKAKKGYIIYRIRIRHGGRKCPVPKGATYGKPVHHGVNQLKFAHSFSPLQRSELDATVGL
Conservation Score
1
PhyloCSF Frame 1
0
No. of Spectra
3
CPC Coding Probability
0.433356
PhyloCSF Frame 2
0
CNTI Index
noncoding
Max Probability
0.9658
PhyloCSF Frame 3
0
CNTI Score
-0.33780336
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