McDonnell Genome Institute

Washington University

Transcript

lnc-SHOC2-1:2

Chromosome

chr10

Gene Name

lnc-SHOC2-1

Start

111019005

CPC Label

noncoding

End

111022987

Cancer

BRCA-Luminal A

Strand

+

Peptide

SELYVSQLK

Modified Peptide

n[145]SELYVSQLK

Peptide Length

9

ORF Length

54

Open Reading Frame (ORF)

MKVKNINKSELYVSQLKQVTSLSSSSLIFPDLGPLYFAEFYLLCIPCLLTSTVH

Conservation Score

0.793

PhyloCSF Frame 1

-5.172

No. of Spectra

1

CPC Coding Probability

0.0263014

PhyloCSF Frame 2 

-4.88

CNTI Index

noncoding

Max Probability

0.9979

PhyloCSF Frame 3

-5.579

CNTI Score

-0.405801077