McDonnell Genome Institute
Transcript
lnc-SHMT1-1:1
Chromosome
chr17
Gene Name
lnc-SHMT1-1
Start
18379854
CPC Label
coding
End
18388984
Cancer
OV
Strand
-
Peptide
HDAALCAQDPPPAAGWGERK
Modified Peptide
n[145]HDAALCAQDPPPAAGWGERK
Peptide Length
20
ORF Length
252
Open Reading Frame (ORF)
LPPCRCPRAHPAVVLHVLELGLLADAQVQEVLPLHLQGLLVGLGTAARSPRTTPRPRTHVHPPLPRPPRPFSLSPCPQRTWMGPTAGCRSSTMRLPSSSSWFTLCSWLSSSCCLKCWGRVGWGAAVRTRMALVAPAWPQPLPADLVFPPHARRVGHEVAPVLLQDAALLLRQGAQLPRAALQCVYRLPRLCPRHDAALCAQDPPPAAGWGERKWGAKGAIGRRSGTLAPGRVRAATQAHLQPPCPTLPPAHQ
Conservation Score
1
PhyloCSF Frame 1
0
No. of Spectra
15
CPC Coding Probability
0.992185
PhyloCSF Frame 2
0
CNTI Index
noncoding
Max Probability
0.9045
PhyloCSF Frame 3
0
CNTI Score
-0.245832856