McDonnell Genome Institute

Washington University

Transcript

lnc-SHC3-6:1

Chromosome

chr9

Gene Name

lnc-SHC3-6

Start

89360790

CPC Label

noncoding

End

89377282

Cancer

GBM

Strand

-

Peptide

AVAGEHDR

Modified Peptide

n[230]AVAGEHDR

Peptide Length

8

ORF Length

258

Open Reading Frame (ORF)

LESTQINEKLLSLIWGRHSLAEAVQPPAPAWPRRDSWARSFLSVSCCVLPSLACDVLLATSSSVPSLFCPLCLTASSPKPLPPPGSSSLSCLGHVGDRRLSSPWTPWPASGAGPDSSSRVSLLPPFLSDQAQHVHALGNFYLFCQATGPADIRFVWEKNGRALETCVPVQTHALPDGRAHALSWLQDAIRESAEYRCSVLSSAGNKTSKVQVAVMRPEVTHQERWTRELSAWRAVAGEHDRMMQSWRKAWESCSKDTL

Conservation Score

1

PhyloCSF Frame 1

8.66

No. of Spectra

7

CPC Coding Probability

0.0710036

PhyloCSF Frame 2 

0

CNTI Index

coding

Max Probability

0.9994

PhyloCSF Frame 3

0

CNTI Score

0.689614382