The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-SHC3-10:5

Chromosome

chr9

Gene Name

lnc-SHC3-10

Start

88514928

CPC Label

noncoding

End

88534159

Cancer

HCC

Strand

-

Peptide

YQTHSSLYQLQQK

Modified Peptide

n[230]YQTHSSLYQLQQK

Peptide Length

13

ORF Length

37

Open Reading Frame (ORF)

LEASSHLHLDDEKPPRYQTHSSLYQLQQKAIKPGSRA

Conservation Score

0.026

PhyloCSF Frame 1

-5.153

No. of Spectra

6

CPC Coding Probability

0.179369

PhyloCSF Frame 2 

-3.952

CNTI Index

noncoding

Max Probability

0.9996

PhyloCSF Frame 3

-5.67

CNTI Score

-0.342239948