The Maher Lab

McDonnell Genome Institute

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LncRNA Peptides
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Washington University

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Transcript

lnc-SH3TC1-3:1

Chromosome

chr4

Gene Name

lnc-SH3TC1-3

Start

8159076

CPC Label

noncoding

End

8161099

Cancer

EOGC

Strand

+

Peptide

LGQLFFTSLQR

Modified Peptide

n[145]LGQLFFTSLQR

Peptide Length

11

ORF Length

195

Open Reading Frame (ORF)

LGQLFFTSLQRGKLRRGRCSGRISPHPSARLALVGIRAQVSCLRAWAVRASPPTPGSRRSSPAGAQLGGAPGEVARLTSAQSPAPASTVTGYPVTSGAQHRAWTRVQERESGNGEEQGSPLCAWCDKRRAAERSGGAGKHKDAHQARRAWAGGAFRMQNRGNLAWRERPRTFGLGQGCLEMLSTSGRRLGTENVD

Conservation Score

0.351

PhyloCSF Frame 1

-4.294

No. of Spectra

1

CPC Coding Probability

0.243535

PhyloCSF Frame 2 

-3.625

CNTI Index

noncoding

Max Probability

0.9989

PhyloCSF Frame 3

-2.173

CNTI Score

-0.302578698