The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-SFSWAP-6:1

Chromosome

chr12

Gene Name

lnc-SFSWAP-6

Start

131667491

CPC Label

noncoding

End

131668246

Cancer

HCC

Strand

+

Peptide

VLWSGSVVGK

Modified Peptide

VLWSGSVVGK

Peptide Length

10

ORF Length

64

Open Reading Frame (ORF)

MKLNIFPAASCQKLIEVDDERKLRSLYEMPVATEVAADALVKHGRVLWSGSVVGKTNKPSHEAG

Conservation Score

1

PhyloCSF Frame 1

0

No. of Spectra

1

CPC Coding Probability

0.04855

PhyloCSF Frame 2 

0

CNTI Index

coding

Max Probability

0.5696

PhyloCSF Frame 3

0

CNTI Score

0.613712725