The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-SERPIND1-1:33

Chromosome

chr22

Gene Name

lnc-SERPIND1-1

Start

20701113

CPC Label

coding

End

20704606

Cancer

BRCA-Basal-like

Strand

+

Peptide

TGGGGAPQGGLEAR

Modified Peptide

n[145]TGGGGAPQGGLEAR

Peptide Length

14

ORF Length

144

Open Reading Frame (ORF)

MCRATLGLPLPPIVIQPARRSLPPIVTPASRRLGPRGGRHLGSVSTAMAATQELLLQLQKDNRDGRQRKQELEKLMRGLEAESESLPQPAPAGPERAGAEAAAEAKPGSAASARGGARGGAGARAAGAQKTGGGGAPQGGLEAR

Conservation Score

1

PhyloCSF Frame 1

8.811

No. of Spectra

12

CPC Coding Probability

0.952733

PhyloCSF Frame 2 

0

CNTI Index

coding

Max Probability

0.9975

PhyloCSF Frame 3

10.659

CNTI Score

0.782606615