McDonnell Genome Institute

Washington University

Transcript

lnc-SCRIB-1:2

Chromosome

chr8

Gene Name

lnc-SCRIB-1

Start

143765397

CPC Label

noncoding

End

143771863

Cancer

BRCA-HER2-enriched

Strand

-

Peptide

SQVGLGGAR

Modified Peptide

n[145]SQVGLGGAR

Peptide Length

9

ORF Length

323

Open Reading Frame (ORF)

LLAQPPRGLLLPAHRSQVGLGGARRSHRPLRATAPSPEATVHASEVGARSEPHPHHAPCFAISSPCLLPGPRLLRLPVLTSFCGVSICSRYSRRSSRRRASSLLARSCRKAPWIALAARSSAGPGVGRGSRGRVLASSHACCAPGSGAGPAPAPAPTEGPKRLSKPPARPSRGSRPQRPHEEAAREPGTRRGPRSAGTSPAPRRRGSCEPRRARSSGAPRNGEEGVLSPAGHPSLKAEGPSCIQAPASEGWTERGGPRPGRAHHSPAGLRRGRGAQGPRGSSVLSGSASPSPHRGCNGALSPSLEPPRSEEGAEERASGSALP

Conservation Score

1

PhyloCSF Frame 1

0

No. of Spectra

1

CPC Coding Probability

0.460468

PhyloCSF Frame 2 

8.729

CNTI Index

coding

Max Probability

0.0697

PhyloCSF Frame 3

10.217

CNTI Score

0.760230961