McDonnell Genome Institute

Washington University

Transcript

lnc-SCGB3A1-3:5

Chromosome

chr5

Gene Name

lnc-SCGB3A1-3

Start

180485977

CPC Label

coding

End

180494165

Cancer

EOGC

Strand

-

Peptide

LHLPDSSNSPASVSR

Modified Peptide

n[145]LHLPDSSNSPASVSR

Peptide Length

15

ORF Length

163

Open Reading Frame (ORF)

MWRQEETKSASLMSLGLGFSRVLEWAEEWRLLVCQGEQDEAVLILMLIGSFGQGLGVFKLVGITCSTGVQDLLEHFFHIYLLIFVFLFFSLRQSLALLPRLEHSGTISACCKLHLPDSSNSPASVSRVAGITEAHHHTQLIFVFLVETGFHHVGQAGLELLTS

Conservation Score

0.165

PhyloCSF Frame 1

0

No. of Spectra

9

CPC Coding Probability

0.832761

PhyloCSF Frame 2 

0

CNTI Index

noncoding

Max Probability

0.9653

PhyloCSF Frame 3

0

CNTI Score

-0.254133358