The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-SCAND1-5:1

Chromosome

chr20

Gene Name

lnc-SCAND1-5

Start

36228162

CPC Label

noncoding

End

36232794

Cancer

OSCC

Strand

-

Peptide

GNATDSAAPLNFPFAQR

Modified Peptide

n[145]GNATDSAAPLNFPFAQR

Peptide Length

17

ORF Length

134

Open Reading Frame (ORF)

MEPPLQLLTQKEGELSRRAGRRFCGFSTRIVERTWCMESVLLHSGGVGVDPPACTRGNATDSAAPLNFPFAQRSKCYSDFLPCLRPAPAKQLRCMSSLTSQRDASNLGRLGASLGYAPIGWREWGDALRWASHG

Conservation Score

1

PhyloCSF Frame 1

-3.111

No. of Spectra

1

CPC Coding Probability

0.210624

PhyloCSF Frame 2 

-4.427

CNTI Index

noncoding

Max Probability

0.295

PhyloCSF Frame 3

-4.908

CNTI Score

-0.350320894