The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-RRAGC-10:1

Chromosome

chr1

Gene Name

lnc-RRAGC-10

Start

38754215

CPC Label

coding

End

38815979

Cancer

BRCA-Luminal B

Strand

-

Peptide

AVLDLSR

Modified Peptide

n[145]AVLDLSR

Peptide Length

7

ORF Length

177

Open Reading Frame (ORF)

MGQRRKVTCSKSPSSVTPVPEWEWVIMMIQPLQGNQSFQTVWWRTDGTAPRSPRAAQPQRCSIMGCSAEAEALGHRAKHICLKWKSEKLKRGPRESRAVLDLSRKVCKLQNDCCLPSALHISHSRFIDTPFKAVPPNEKSMNYVVVQLGCEFQLGHYVTLEKLLNFVCLISSSEKQR

Conservation Score

0.428

PhyloCSF Frame 1

0

No. of Spectra

1

CPC Coding Probability

0.637352

PhyloCSF Frame 2 

0

CNTI Index

noncoding

Max Probability

0.0626

PhyloCSF Frame 3

0

CNTI Score

-0.34217308