The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-RPS6KA4-3:1

Chromosome

chr11

Gene Name

lnc-RPS6KA4-3

Start

64449056

CPC Label

coding

End

64451656

Cancer

LUAD

Strand

+

Peptide

MATRPAAK

Modified Peptide

M[147]ATRPAAK

Peptide Length

8

ORF Length

71

Open Reading Frame (ORF)

MATRPAAKEAGELEPGLGGSSSERQEGGPNVPPPLTSSPCGEGQQSLLESWICVLCSLGDTSLMVTDTPQR

Conservation Score

0.471

PhyloCSF Frame 1

-4.636

No. of Spectra

5

CPC Coding Probability

0.525657

PhyloCSF Frame 2 

-3.756

CNTI Index

noncoding

Max Probability

0.9987

PhyloCSF Frame 3

-4.298

CNTI Score

-0.294281681