McDonnell Genome Institute

Washington University

Transcript

lnc-RPGR-3:1

Chromosome

chrX

Gene Name

lnc-RPGR-3

Start

38395368

CPC Label

coding

End

38395895

Cancer

OSCC

Strand

-

Peptide

TEPAVQMGEPAR

Modified Peptide

n[145]TEPAVQMGEPAR

Peptide Length

12

ORF Length

125

Open Reading Frame (ORF)

LARLGWATITCMSISGRLGFQRGQHSAPGGACNSSLFQSLCHPWGHRTVRNKTEPAVQMGEPARWGAFVSSLPPMDGTVSMLCAERTVGLCTMSSGCPRSVLCVNAGMANPSAFLRHFYLVVMAL

Conservation Score

0.545

PhyloCSF Frame 1

0

No. of Spectra

5

CPC Coding Probability

0.801373

PhyloCSF Frame 2 

0

CNTI Index

noncoding

Max Probability

0.7544

PhyloCSF Frame 3

0

CNTI Score

-0.409574059