The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-RIMBP3-3:1

Chromosome

chr22

Gene Name

lnc-RIMBP3-3

Start

18650022

CPC Label

coding

End

18653617

Cancer

OV

Strand

-

Peptide

MHSLPGLQAEAVDVSRNWLTAVPNCPVFPK

Modified Peptide

n[145]MHSLPGLQAEAVDVSRNWLTAVPNCPVFPK

Peptide Length

30

ORF Length

437

Open Reading Frame (ORF)

MHSLPGLQAEAVDVSRNWLTAVPNCPVFPKTCTWLRWCGPGSQVGSSKDQGSASPVSMSRADSFEQSIRAEIEQFLNEKRQHENQKCDGSVEKKPDTHENSAKSLSKSHQEPATKVVHRQGLMGVQKEFAFCRPPPVSKDKRAAQKPQVQGHDHAGEGGQHKASNPHRPSEAVQNKSGIKRNASTARRGKRVTSAVQAPEASDSSSDDGIEEAIQLYQVQKTRKEADGDPPQRVQLQEERAPAPPAHSTSSATKSALPETHRKTPSKKKPVPTKTTDPGPGDLDADHSPKIPKETKAPPPTSPASRSKFVEWSSCQADTSAELMCVEAVLDIFKTILPALWRAAMGPCPQAHSSTPPTCLPALMVTVAPWTATTALSRKSGRFWPSRCSLEVCWPEVRAALRLPRAHFHHLASAARPAAPRPLSLKHWTHSWLQKEA

Conservation Score

1

PhyloCSF Frame 1

0

No. of Spectra

3

CPC Coding Probability

0.999818

PhyloCSF Frame 2 

0

CNTI Index

coding

Max Probability

0.5261

PhyloCSF Frame 3

0

CNTI Score

0.789541799