The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-RBM33-1:4

Chromosome

chr7

Gene Name

lnc-RBM33-1

Start

156194102

CPC Label

coding

End

156209840

Cancer

CCRC

Strand

+

Peptide

EGAQNWK

Modified Peptide

n[230]EGAQNWK

Peptide Length

7

ORF Length

160

Open Reading Frame (ORF)

MLRLVKVFLLVDHKKSPSGNNIFPGPKNINRGLPDFKSTLSDMGVFTSPHLWQREGAQNWKLPDRIISSLASCLVRIALGKLLFLIFGERPRSEAKTKSDADCYLHFLGTNPLVFQGWKRGREHRWRKETEKGRRAQPPRQPGCAEFLEHHRTLLVLVGF

Conservation Score

0.998

PhyloCSF Frame 1

-3.125

No. of Spectra

3

CPC Coding Probability

0.631679

PhyloCSF Frame 2 

0

CNTI Index

noncoding

Max Probability

0.9972

PhyloCSF Frame 3

-3.304

CNTI Score

-0.349302657