The Maher Lab

McDonnell Genome Institute

Washington University

Transcript

lnc-PXDC1-1:4

Chromosome

chr6

Gene Name

lnc-PXDC1-1

Start

3657817

CPC Label

noncoding

End

3719648

Cancer

OSCC

Strand

-

Peptide

REDPLPSLRVPAHQGNISPGGVLMVGR

Modified Peptide

n[145]REDPLPSLRVPAHQGNISPGGVLM[147]VGR

Peptide Length

27

ORF Length

40

Open Reading Frame (ORF)

MICSNLIRVRREDPLPSLRVPAHQGNISPGGVLMVGRQGT

Conservation Score

0.303

PhyloCSF Frame 1

-4.957

No. of Spectra

6

CPC Coding Probability

0.0259986

PhyloCSF Frame 2 

-5.979

CNTI Index

noncoding

Max Probability

0.529

PhyloCSF Frame 3

-4.502

CNTI Score

-0.353678494