McDonnell Genome Institute

Washington University

Transcript

lnc-PRR5-5:1

Chromosome

chr22

Gene Name

lnc-PRR5-5

Start

44566964

CPC Label

noncoding

End

44568247

Cancer

BRCA-Luminal B

Strand

+

Peptide

AGAAEMTLTELR

Modified Peptide

n[145]AGAAEM[147]TLTELR

Peptide Length

12

ORF Length

182

Open Reading Frame (ORF)

MAAIRAQYDELAWKNGEELDKYLSQQIEESTTVVTTQSAKAGAAEMTLTELRCTVQSLEINLNSMRNLKASLENSVREVKACYTLQMEQLNGILLHLGSELAQTQAKGQCQAQEYEALLNIKVKLEAEIATYCHLLEDGKDFNLGDALDSSNSMQTIPKTTTHQRVDGKVVSETNDTKVLRH

Conservation Score

1

PhyloCSF Frame 1

0

No. of Spectra

8

CPC Coding Probability

0.237138

PhyloCSF Frame 2 

0

CNTI Index

coding

Max Probability

0.9876

PhyloCSF Frame 3

0

CNTI Score

0.789211299