McDonnell Genome Institute

Washington University

Transcript

lnc-PRKCD-2:1

Chromosome

chr3

Gene Name

lnc-PRKCD-2

Start

53046074

CPC Label

noncoding

End

53048166

Cancer

OV

Strand

+

Peptide

SGAGPSAPPMSLGFRR

Modified Peptide

n[145]SGAGPSAPPM[147]SLGFRR

Peptide Length

16

ORF Length

196

Open Reading Frame (ORF)

LPLVGDRALPLRPERAPKCPLSAKSGAGPSAPPMSLGFRRRRPVNLESSCSEGAQDSCELGRTSPEPREGSEPRRRLQVGPAARGDRGRLRCPSSPPPPERRCPWDIHPPTCSGKFPPEGSSRATETRELPIRLPGRERRYRTGPRGAPTARRKSGVLTVCQVRAQATSLNRSEKYPTSQTCSKSRCWLDLNPDFF

Conservation Score

1

PhyloCSF Frame 1

-2.094

No. of Spectra

2

CPC Coding Probability

0.285791

PhyloCSF Frame 2 

0.413

CNTI Index

coding

Max Probability

0.6975

PhyloCSF Frame 3

-0.885

CNTI Score

0.75062312